De Bruijn Graph Calculator
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de Bruijn Graph -- from Wolfram MathWorld
- https://mathworld.wolfram.com/deBruijnGraph.html
- de Bruijn Graph. Download Wolfram Notebook. A graph whose nodes are sequences of symbols from some alphabet and whose edges indicate the sequences …
Genome Assembly using de Bruijn Graphs - Towards Data Science
- https://towardsdatascience.com/genome-assembly-using-de-bruijn-graphs-69570efcc270
- Genome Assembly using de Bruijn Graphs Source After genome sequencing, we can figure out the order of DNA nucleotides, or bases, in a genome — the order of As, Cs, Gs, and Ts that make up an …
De Bruijn Graph assembly - Department of Computer Science
- https://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf
- De Bruijn graph AAA, AAB, ABB, BBB, BBA Take each length-3 input string and split it into two overlapping substrings of length 2. Call these the left and right 2-mers. AA, AA, AA, …
de Bruijn Sequence -- from Wolfram MathWorld
- https://mathworld.wolfram.com/deBruijnSequence.html
- A de Bruijn sequence can be generated in the Wolfram Language using DeBruijnSequence[list, n]. Every de Bruijn sequence corresponds to an Eulerian cycle …
De Bruijn sequence | Set 1 - GeeksforGeeks
- https://www.geeksforgeeks.org/de-bruijn-sequence-set-1/
- The de Bruijn sequence will contain the characters of the starting node and the characters of all the edges in the order they are traversed in. Therefore the length of the string will be k n +n-1. We will …
De Bruijn Graph Assembly - Department of Computer Science
- https://www.cs.jhu.edu/~langmea/resources/lecture_notes/17_assembly_dbg_v2.pdf
- De Bruijn graph A procedure for making a de Bruijn graph for a genome Start with an input string: a_long_long_long_time Take each k mer and split into left and right k-1 mers …
Novel De Bruijn Graph Assembler for Millipede Genomes
- https://github.com/ansonk4/Novel-De-Bruijn-Graph-Assembler-for-Millipede-Genomes
- The resultant genome and dbg is stored in dbg_output/; Test case. T_c_100k.fasta and T_c_1000_filter_CDH_80%.clstr are provided for testing purposes. They are obtained …
Generate de Bruijn sequences - combos.org
- http://combos.org/bruijn
- A de Bruijn sequence, named after the Dutch mathematician Nicolaas Govert de Bruijn [dB46], is a cyclic sequence of length $k^n$ in which every string of length $n$ over the …
GitHub - rchikhi/debruijn: de Bruijn graph construction tool
- https://github.com/rchikhi/debruijn
- The de Bruijn graph is useful for many next-generation sequencing applications, including de novo genome assembly and variant detection. N is the number of k-mers present in …
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